ChangeLog

Version: 1.1.5

• add: docs/ by readthedocs

• change: merge complemented and complement() to complement, merge reversed and reverse() to reversed

• change: bioseq.config.TABLE to bioseq.config.CODON_TABLE

• remove: bioseq.config.setAlignPara, bioseq.config.setStartCoden

Version: 1.1.4

• add: bioseq.utils.fetchENS()

• add: bioseq.utils.parseFasta()

• add: iterator option of bioseq.utils.loadFasta()

• add: multi-uids fetch support for bioseq.utils.fetchNCBI()

Version: 1.1.3

• fix: Wrong results from bioseq.utils.loadFasta()

Version: 1.1.2

• change: RNA.getOrf(), RNA.transcript()

• add: algoritm.pyi

Version: 1.1.1

• add: unittest

• fix: some bug found in unintest

Version: 1.1.0

• add: infoattribute for Sequence

• add: toDNA(), toRNA(), toPeptide() method for Sequence

• add: utils.fetchNCBI()

• change: utils.read_fasta() to utils.loadFasta and be a generator of Sequence

Version: 1.0.9

• add: add type annotations, remove *.pyi file

• add: Sequence.reset_cache() to reset some cached property, to update the value after mutation, include weight, composition, GC(DNA, RNA), orf(DNA, RNA), peptide(DNA, RNA), translate(DNA, RNA), pI(Peptide), Hphob_list(Peptide).

• add: warning when mutation overlapped previous mutation

• fix: some wrong typing check in Sequence.find(), Sequence.mutation()

• remove: return_score: bool for Sequence.align()